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Numerical Representation of Symbolic Data
A method of direct numerical representation of symbolic data is proposed. The method starts with parsing a sequence into an ordered set (spectrum) of distinct, non-overlapping short strings of symbols (words). Next, the words spectrum is mapped onto a vector of binary components in a high dimensi ...
A New Method for Symbolic Sequences Analysis. An Application to Long Sequences
The method for symbolic sequence decomposition into a set of consecutive, distinct, non-overlapping strings of various lengths is proposed. Representation of the sequence as a set of words allows one to use set theory notions. The main result is a quite new definition of the similarity between ...
PARAMETER ANALYSIS OF CLUSTERS OF MELTING TEMPERATURES OF DNA CHAINS
In the paper the problem of DNA sequencing by hybridization (SBH) is considered.
With the developed software, MELTEM, several assembling procedures are used to ease a collecting a subset of oligonucleotides that would melt under practically identical conditions in a hybridization experiment ...
A Representative Set Method for Symbolic Sequence Clustering
Sequence decomposition into a set of consecutive, distinct subsequences is crucial for symbolic sequence analysis. It reduces significantly the reference base of the recorded sequence for further retrieval and allows for original similarity and membership measures of the sequences. The introduced ...